Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs2798286 | chr4:3046173 | A/G | 0.000313 | 485 | 15.8 | 14.93 | 16.92 | KM Plot |
| THCA | rs281935 | chr1:91813719 | A/G | 7.73E-6 | 490 | 15.7 | 16.68 | 17.77 | KM Plot |
| THCA | rs281977 | chr1:91800347 | G/A | 8.26E-6 | 487 | 17.77 | 16.97 | 15.67 | KM Plot |
| THCA | rs282014 | chr1:91857105 | T/A | 8.1E-6 | 488 | 17.77 | 16.68 | 15.67 | KM Plot |
| THCA | rs282020 | chr1:91854963 | C/T | 3.42E-5 | 486 | 15.33 | 17.03 | 15.33 | KM Plot |
| THCA | rs282023 | chr1:91852857 | C/T | 4.13E-5 | 478 | 15.33 | 17.03 | 15.63 | KM Plot |
| THCA | rs282045 | chr1:91836212 | G/T | 7.94E-6 | 489 | 17.77 | 16.4 | 15.7 | KM Plot |
| THCA | rs282050 | chr1:91829129 | G/C | 7.76E-6 | 490 | 17.77 | 16.68 | 15.67 | KM Plot |
| THCA | rs282053 | chr1:91824625 | C/A | 1.04E-5 | 478 | 17.77 | 16.97 | 15.77 | KM Plot |
| THCA | rs2835251 | chr21:37419593 | T/C | 2.92E-5 | 490 | 16.67 | 13.5 | 12.82 | KM Plot |
| THCA | rs2835271 | chr21:37452614 | C/T | 0.000122 | 478 | 16.63 | 14.33 | 9.73 | KM Plot |
| THCA | rs2835272 | chr21:37452919 | T/C | 0.000122 | 478 | 16.63 | 14.33 | 9.73 | KM Plot |
| THCA | rs2835273 | chr21:37454691 | T/G | 0.000122 | 478 | 16.63 | 14.33 | 9.73 | KM Plot |
| THCA | rs2835274 | chr21:37457115 | G/T | 0.000121 | 479 | 16.63 | 14.38 | 9.73 | KM Plot |
| THCA | rs28365998 | chr10:81965436 | C/A | 0.000115 | 486 | 15.9 | 15.9 | 9.77 | KM Plot |